Why is hair kinky?

I saw this paper in Nature Genetics, Disruption of P2RY5, an orphan G protein-coupled receptor, underlies autosomal recessive woolly hair:

The genetic determinants of hair texture in humans are largely unknown. Several human syndromes exist in which woolly hair comprises a part of the phenotype; however, simple autosomal recessive inheritance of isolated woolly hair has only rarely been reported…In all cases, we discovered pathogenic mutations in P2RY5, which encodes a G protein-coupled receptor and is a nested gene residing within intron 17 of the retinoblastoma 1 (RB1) gene. P2RY5 is expressed in both Henle’s and Huxley’s layers of the inner root sheath of the hair follicle. Our findings indicate that disruption of P2RY5 underlies ARWH and, more broadly, uncover a new gene involved in determining hair texture in humans.

Disease loci can tell us a lot about the normal range of human variation; the blue-eye gene was originally implicated in a form of albinism. So I got curious and popped P2RY5 into Haplotter, which detects recent selection events. Here’s what I found….


Here’s iHS:
iHS.gif
And H:
Het.gif
Looks like there’s some action going on here. We’re looking at Yoruba (YRI), European (CEU) and East Asian groups (ASN) if you didn’t know. Here’s the table which shows p-values in the genomic region around this locus:

Genes in the region

Gene ID Name Region CEU YRI ASN
8803 SUCLA2 46314792 – 46373463 0.093768 0.011064 0.359281
55270 NUDT15 46409704 – 46419283 0.093768 0.005330 0.359281
29079 MED4 46448093 – 46467241 0.117392 0.015274 0.539616
9445 ITM2B 46602310 – 46634228 0.999955 0.300291 0.999954
5925 RB1 46675912 – 46854023 0.999955 0.021859 0.999954
10161 P2RY5 46783275 – 46787947 0.999955 0.021814 0.539616
1102 RCBTB2 46861100 – 46905317 0.999955 0.036685 0.539616
57105 CYSLTR2 47078952 – 47081499 0.541838 0.999955 0.999954
9206 RAD17P2 47415974 – 47418931 0.999955 0.225666 0.539616

I’ll let you figure out what’s going on with NUDT15….
Related: EDAR controls hair thickness.

0
Posted in Uncategorized

Comments are closed.