I’m in a hurry right now, and won’t be posting much this week. But, I thought I’d dump some of the ADMIXTURE runs I have. This is one with 80,000 markers, and Eurasian populations, Papuans and Mozabites. I removed the New World and Africa to constrain the variance space. This time I’ve labelled the ancestral components, but do not take them totally literally. I think in the future I might just remove the Kalash to see what happens. This is K = 7. Not too busy, but I think enough K’s to separate out the various West Eurasian groups. Additionally I’ve put the genetic distances, Fst, below, and, visualized them on an MDS. Nothing too surprising.
| Fst | |||||||
| Northeast Asian | South Asian | European | West Asian | Kalash | Southeast Asian | Papuan | |
| Northeast Asian | 0 | 0.1 | 0.13 | 0.142 | 0.137 | 0.052 | 0.225 |
| South Asian | 0.1 | 0 | 0.058 | 0.07 | 0.066 | 0.097 | 0.201 |
| European | 0.13 | 0.058 | 0 | 0.056 | 0.075 | 0.132 | 0.236 |
| West Asian | 0.142 | 0.07 | 0.056 | 0 | 0.098 | 0.139 | 0.238 |
| Kalash | 0.137 | 0.066 | 0.075 | 0.098 | 0 | 0.136 | 0.243 |
| Southeast Asian | 0.052 | 0.097 | 0.132 | 0.139 | 0.136 | 0 | 0.214 |
| Papuan | 0.225 | 0.201 | 0.236 | 0.238 | 0.243 | 0.214 | 0 |
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