Evolution doesn't fit our generalities

“Is Evolution Predictable?” asks a piece in Science. Here’s the first paragraph:

If one could rewind the history of life, would the same species appear with the same sets of traits? Many biologists have argued that evolution depends on too many chance events to be repeatable. But a new study investigating evolution in three groups of microscopic worms, including the strain that survived the 2003 Columbia space shuttle crash, indicates otherwise. When raised in a lab under crowded conditions, all three underwent the same shift in their development by losing basically the same gene. The work suggests that, to some degree, evolution is predictable.

The “some degree” part is the catch. I’m a big fan of general ideas, but the more I learn about evolution the more suspicious I become of broad truths. A given dynamic often has some degree of validity, but extending it too far leads to error or confusion in innumerable specific cases. Evolution may be the most robust and powerful theory for deductive inference in biology, but even here rationalism has its limits. For example, before the rise of molecular methods in exploring polymorphism the debates as to the nature of genetic variation in natural populations tended to focus on outcomes based on adaptive pressures. One school followed R. A. Fisher and argued that polymorphism was strongly constrained by negative selection, with periodic bouts of genetic diversity at a given locus as a positively selected allele was in transience between ~0% and ~100%. Sewall Wright on the other hand suggested that balancing selection (e.g., frequency dependence, heterozygote advantage, environmental heterogeneity) would maintain polymorphism within a population. The logic in both cases was clear, crisp, and plausible. But it turned out that in a deep way the argument was in the “not even wrong category.” Neutral theory and its heirs pointed out, correctly it seems, that at the molecular level  most variation was driven by non-adaptive forces such as random genetic drift. Though some thinkers had conceptualized the model in its broad outlines prior to the empirical results, it was the latter which crystallized the need for a robust model and marginalized the older debate centered around adaptation and natural selection. But even here neutrality is not a model to explain it all. There are cases where adaptation and natural selection are relevant. In some instances you see classical dynamics with transients generated by positive selection sweeping through populations, and in other cases balancing dynamics may be operative. The overall point is that we must always be careful about bald assertions of the form “the latest research overturns….” in this area. Evolution is such a sprawling and cosmopolitan intellectual empire. Nature is subtle and richly textured, and our conceptual frameworks map onto the shape of reality only coarsely.

As for the paper itself, it’s nice and elegant. Patrick Phillips, who knows a thing or two about evolution and elegans is quoted in Science as saying that “”It’s an amazing study….” The letter to Nature is Parallel evolution of domesticated Caenorhabditis species targets pheromone receptor genes. Here’s the abstract:

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Looking for a few good 145+ I.Q. individuals

Cross-posted from Discover

My friend Steve Hsu gave a talk at Google today. Here are the details:

I’ll be giving a talk at Google tomorrow (Thursday August 18) at 5 pm. The slides are here. The video will probably be available on Google’s TechTalk channel on YouTube.

The Cognitive Genomics Lab at BGI is using this talk to kick off the drive for US participants in our intelligence GWAS. More information at www.cog-genomics.org, including automatic qualifying standards for the study, which are set just above +3 SD. Participants will receive free genotyping and help with interpreting the results. (The functional part of the site should be live after August 18.)

Title: Genetics and Intelligence

Abstract: How do genes affect cognitive ability? I begin with a brief review of psychometric measurements of intelligence, introducing the idea of a “general factor” or IQ score. The main results concern the stability, validity (predictive power), and heritability of adult IQ. Next, I discuss ongoing Genome Wide Association Studies which investigate the genetic basis of intelligence. Due mainly to the rapidly decreasing cost of sequencing, it is likely that within the next 5-10 years we will identify genes which account for a significant fraction of total IQ variation.

We are currently seeking volunteers for a study of high cognitive ability. Participants will receive free genotyping.

From what I recall of my discussion with Steve the aim here is to fish in the extreme tail of the distribution to see if that allows for an easier catchment of I.Q. upward incrementing alleles. 3 standard deviations above the mean I.Q. is about 1 out of 750 individuals or so.

None dare call it eugenics

In the comments below Phillip Lemky observes:

Hi Razib. I find disturbing all this talk of assortative mating and biological castes, as it sounds eerily similar to eugenics. Please correct me if I’m mistaken to be making this connection.

This is a common response to some of the things mooted on this weblog. Freddie deBoer even sent me a peculiar email last year expressing how appalled he was at some of the topics and comments in these parts (if you know Freddie’s internet reputation, this is not surprising behavior). First, I don’t know what people mean by “eugenics.” Here is the first sentence in Wikipedia for the eugenics entry:

Eugenics is the “applied science or the bio-social movement which advocates the use of practices aimed at improving the genetic composition of a population”, usually referring to human populations….

Wikipedia isn’t authoritative, and colloquial definitions can deviate from “official” definitions. As a rule I don’t generally talk much about state coercion or manipulation of the reproduction of the citizenry, so I don’t see that I’m talking about classical eugenics. But, it does seem that there are eugenical implications in the mass action of human behavior and the flexibility of choices which modern humans have. Consider this long article in The New York Times Magazine, The Two-Minus-One Pregnancy:

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There would have been a Plato without Plato

In the comments of my post “Platonism is useful only when it’s useful” several people made a few references to Plato, as well as Platonism. That is fair and makes sense. And there’s a deep strain of anti-Plato sentiment amongst respectable people (e.g., Karl Popper). I assume of the two ancient Greek philosophers of renown, Plato and Aristotle, most readers would be more sympathetic to the latter. He may have gotten a lot wrong, but Aristotle’s more empirical bent is probably more congenial to many moderns than Plato’s greater reliance on abstract theory.

But I don’t think that we can put Platonism at the feet of Plato. There are deep human intuitions about the nature of reality, which Plato and his followers systematized at an early date. But this systematization would have happened at some point in history, and we would have termed it by some name, which would be reviled and lauded by intellectual partisans of a later age.
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The HGDP made less racist!

Back in the 1990s there was a lot of controversy around the Human Genome Diversity Project. In fact there were whole books devoted to the sociology of the project. Though on some of the details critics of the project may have had a point, their overall aim of stalling scientific inquiry in this area failed in totality. A few years ago a team out of the University of Chicago even produced a web browser so you can explore the data yourself. To my knowledge this hasn’t resulted in massive genocidal action against indigenous peoples; the human race doesn’t seem to need any scientific backing for that, alas.

But, if I was a Lefty the-man-is-racist type I think I might assert that the chips which were used to generate the 600,000 markers for the HGDP public data set are racist! I’m not one of those types, so what I really am concerned about is ascertainment bias. From what I have heard many of the SNP chips floating around today are looking for variants found in Europeans most often. That’s because so many study populations in medical genetics are of European descent. This is not a total deal breaker, a lot of European variation is useful in understanding world wide patterns of variation. But ultimately it’s not optimal.

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Looking for a few good 145+ I.Q. individuals

Above is the distribution of self-reported I.Q.s of the readers of this weblog according to the 2011 survey. I point this out because my friend Steve Hsu will be giving a talk at Google later today. Here are the details:

I’ll be giving a talk at Google tomorrow (Thursday August 18) at 5 pm. The slides are here. The video will probably be available on Google’s TechTalk channel on YouTube.

The Cognitive Genomics Lab at BGI is using this talk to kick off the drive for US participants in our intelligence GWAS. More information at www.cog-genomics.org, including automatic qualifying standards for the study, which are set just above +3 SD. Participants will receive free genotyping and help with interpreting the results. (The functional part of the site should be live after August 18.)

Title: Genetics and Intelligence

Abstract: How do genes affect cognitive ability? I begin with a brief review of psychometric measurements of intelligence, introducing the idea of a “general factor” or IQ score. The main results concern the stability, validity (predictive power), and heritability of adult IQ. Next, I discuss ongoing Genome Wide Association Studies which investigate the genetic basis of intelligence. Due mainly to the rapidly decreasing cost of sequencing, it is likely that within the next 5-10 years we will identify genes which account for a significant fraction of total IQ variation.

We are currently seeking volunteers for a study of high cognitive ability. Participants will receive free genotyping.

From what I recall of my discussion with Steve the aim here is to fish in the extreme tail of the distribution to see if that allows for an easier catchment of I.Q. upward incrementing alleles. 3 standard deviations above the mean I.Q. is about 1 out of 750 individuals or so.

Platonism is useful only when it's useful

Below John Farrell posted an amusing comment:

Razib, are you implying there was no clearly defined ‘ontological leap’ from the animal to the human??? I’m going to have to clear this with the CDF in Rome.

The figure to left illustrates the simultaneous encephalization of diverse hominin lineages over the past few million years. When I first saw this result it kind of blew me away. I had known that Neandertals had the largest cranial capacities of any hominins to walk the earth, but to see how many diverse groups exhibited a secular increase in volume over time is still something to behold. It also reminds us that our own conception of “us” vs. “them” in a deep and substantive manner may be somewhat illusory. This element of fiction doesn’t negate the utility of the concepts. There are constructs and ideas which are highly valuable in generating inferences and scaffolding models, which nevertheless collapse under closer scrutiny. But we shouldn’t forget that our concepts are only approximations on the real order of things.

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The point mutation which made humanity

Steve Hsu points me to a piece in The New Yorker on the science and personality of Svante Pääbo. The personality part includes references to Pääbo’s bisexuality, which to me seemed to be literally dropped into the prose to spice it up. Of course it was the science which I found interesting. There are many more bisexuals than there are heterodox scientists. And yet like many researchers of yore it seems that Pääbo is out to find the genes which make humanity distinctive as we understand it (if the reporting is accurate, which I don’t take as a given). There are some interesting tantalizing clues littered about; some genes implicated in autism seem to exhibit Neandertal vs. modern human differences (with the Neandertals carrying the autism-implicated variants).

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Getting better sperm donors

The British newspapers have been reporting on a bizarre story about a Dutch sperm donor who hid a history of mental problems from recipients. I didn’t pay much attention to it because of the British tabloid media’s tendency to sensationalize. But Radio Netherlands also reported the outlines of the story, and there seems to be validity to the broad facts at hand. A Dutch man with a history of mental illness did father many children by offering his services online, and hiding various conditions from potential mothers. Now several of the children have developed the same problems (e.g., autism).

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The end of environmental inequality means the rise of genetic inequality

A few people have pointed me to Charles Murray’s comment at The Enterprise Blog, The Debate about Heritability of General Intelligence Radically Narrows, which alludes to the recent finding of genomic confirmation of the behavior genetic heritability measure for intelligence. Murray indicates that this should end the “debate” on the heritability of intelligence as a quantitative trait. As I implied earlier much of this debate had more to do with rhetoric and ideology than reality, in that I doubt many people support a very low heritability measure for intelligence ( < ~0.30) in developed societies when they don’t have strong ideological commitments. These commitments being that social policy can homogenize environments enough that only the genetic components of variation of a trait value will be important in the future, so that heritability values will go from ~0 to ~1.0.

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