David Reich’s lab has posted an update of their ancient and modern DNA dataset. It’s in their Eigenstrat format. I converted it to Plink format and made it so that the population groups are now in the family ID column.
It’s a big dataset. There are two of them, one with 1.2 million SNPs, and another with 600,000 SNPs. The former has 6,676 individuals, and the latter has 10,215 individuals.
Here are the files for the 1.2 million SNPs: .bed, .bim., and .fam.
And for 600,000 markers, .bed., .bim, and .fam.
Here are the files all zipped together.
Kudos for the valuable, tedious and thankless work.